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  • Adriano dos Santos

How microbiomes influence skin aging: A perspective from medical nutrition

Actualizado: 28 dic 2023

I had the privilege of crafting a scientific literature review for Cg Magazine©, a publication by the Dutch Society of Cosmetic Medicine NVCG-SOCG. This article delves into the current scientific data on the impact of microbiomes on skin aging. Additionally, insights from my clinical practice are shared, discussing potential interventions.




This article consolidates the current body of evidence on how human microbiomes impact skin ageing and a novel concept called the skin interactome which has emerged, emphasizing the integration of the “genome-microbiome-exposome” in the ageing process.

Moreover, it explores potential interventions related to human microbiomes that can be utilized to modulate skin health and ageing.


Ageing Process


Ageing is a universal and irreversible process that occurs at the cellular and molecular levels, resulting in the deterioration of organ systems [1]. While genetic factors determine the lifespan of a species, extrinsic factors such as physical activity, diet, environment, and diseases can accelerate or delay the ageing process [2]. Mechanisms driving ageing include genetic and epigenetic alterations, accumulation of abnormal proteins, oxidative stress, mitochondrial dysfunction, and cellular senescence [3].


Molecular mechanism of ageing. Abbreviation: RNA; ribonucleic acid, ROS; reactive oxygen species.

Figure 1: Molecular mechanism of ageing. Abbreviation: RNA; ribonucleic acid, ROS; reactive oxygen species. [41]


DNA damage, mutations, and telomere shortening occur due to oxidative stress and cell replication. Intrinsic DNA repair systems decline with age, leading to the accumulation of defects and cellular dysfunction [4]. Epigenetic phenomena, such as histone modification and DNA methylation, protect DNA and regulate gene expression [5]. Environmental pollution, an imbalanced diet, and toxic substances generated by microbiota can disrupt epigenetic factors, contributing to cellular dysfunction [5,6].


The accumulation of abnormal proteins is a key factor in age-related degenerative diseases, including dementia and Parkinson's disease. Abnormal protein synthesis or post-translational modifications due to oxidative stress and impaired proteostasis system contribute to their pathogenesis [7].


Mitochondrial dysfunction leads to the production of reactive oxygen species (ROS), causing damage to DNA and proteins, and promoting cellular aging. Pathways related to energy and nutrient metabolism, such as insulin signalling, the TOR pathway, and sirtuin activity, influence gene expression, protein modification, and mitochondrial function, emphasizing the role of dietary patterns and caloric intake in ageing [3, 8].


Cellular senescence, characterized by permanent cell cycle arrest, naturally occurs with ageing due to the absence of telomerase enzyme. However, DNA damage and oxidative stress accelerate cellular senescence. Senescent cells not only lose their regenerative capacity but also contribute to chronic inflammation through the release of proinflammatory cytokines [9].


Skin Ageing and Gut Microbiome


As individuals age, the gut microbiota undergoes significant changes, including a decline in microbial diversity and altered composition [44]. Microbiome composition has been linked to the rate of ageing, with certain bacterial species associated with longevity [10,11,13]. The gut microbiota of centenarians exhibits a distinct composition compared to other age groups, with a higher abundance of beneficial bacteria and increased diversity [13,14]. However, conflicting findings exist, and it is suggested that microbiota differences may be influenced by overall health status rather than solely by ageing [12,13]. Dysbiosis in the gut microbiota with age can contribute to inflammation, frailty, and compromised health [12,15].


The gut microbiota produces bioactive metabolites, including short-chain fatty acids (SCFAs) like butyrate, propionate, and acetate, which have anti-inflammatory and immunomodulatory effects [16,17,18,19]. Age-related dysbiosis, characterized by changes in the Firmicutes-to-Bacteroidetes (F/B) ratio, can impact SCFA production and contribute to ageing, inflammation, and frailty [20,21]. Dysbiosis has also been associated with cellular senescence and the senescence-associated secretory phenotype (SASP), implicating microbial dysbiosis in senescence processes [22]. Prebiotics and probiotics show promise in preventing pathological conditions in the elderly by reducing chronic inflammation and enhancing immune responses [23,24].


Gut dysbiosis in ageing individuals can lead to increased intestinal permeability, allowing pro-inflammatory microbial products to enter the bloodstream and contribute to systemic effects [15]. Microbial metabolites promote SASP damage and upregulate inflammatory molecules, resulting in chronic inflammation or inflammaging [15]. This dysbiosis-induced inflammaging and compromised immune surveillance can impair the removal of senescent cells, further contributing to the ageing process [15].


The human microbiome, which undergoes dynamic changes throughout life, plays a bidirectional role in health and disease. Alterations in microbiome composition, such as a high proportion of Bacteroides and low biological diversity, have been associated with decreased survival in older adults [10, 11].


Age-related intestinal dysbiosis

Figure 2: Age-related intestinal dysbiosis [41]



Possible Interventions to Modulate Skin Health and Aging


The skin interactome, consisting of the genome, microbiome, and exposome, plays a significant role in skin aging and health [29].


Probiotics, specifically Lactobacillus and Bifidobacterium strains, have shown promise in mitigating signs of skin aging such as pH imbalance, oxidative stress, photodamage, and impaired skin barrier function [26]. Examples include Bifidobacterium breve strain YaKult, which protects the skin from UV-induced damage and oxidative stress [30], Lactobacillus plantarum, which inhibits MMP-1 expression and prevents UV-induced photoaging [31], and Lactobacillus reuteri DSM 17,938, which secretes lactic acid to suppress pro-inflammatory cytokines and protect against UVB damage [32]. Clinical trials have demonstrated that daily intake of Lactobacillus plantarum HY7714 improves skin hydration, elasticity, gloss, and reduces wrinkles [28]. The exopolysaccharide (EPS) produced by Lactobacillus plantarum HY7714 regulates the gut-skin axis and affects dermal cell properties [27]. Probiotics may restore the balance between free radicals and scavengers.


Combining probiotics and prebiotics can benefit skin health by increasing hydration, enhancing keratinocyte differentiation, and reducing phenol production [33]. In a trial involving Japanese women, the daily intake of Bifidobacterium breve strain Yakult and galacto-oligosaccharides (GOS) improved skin hydration, cathepsin L-like activity, and decreased phenol levels [33].


Skincare formulations incorporating prebiotics, probiotics, or microbiome-friendly ingredients are gaining interest. Hylocereus undatus fruit extract, rich in antioxidants, may impact the skin microbiome balance [34]. Topical formulations containing bacterial extracts, including various Lactobacillus strains, have been studied for their effects on the skin microbiota [25]. A range of interventions targeting the skin microbiota in ageing has been summarized [25].


Emerging evidence suggests that age-related epigenetic changes can be targeted for future interventions [35,36]. Manipulating epigenomic pathways has the potential to reverse the epigenetic abnormalities associated with ageing [37]. Microbiome analyses and genetic ageing tests, some of which are currently available commercially, can provide valuable information about an individual's ageing status, guiding clinicians in determining appropriate interventions [38,39]. Similar to drugs targeting the microbiome, there are commercially available drugs targeting epigenetic enzymes, with others being investigated in clinical trials. However, large confirmatory trials and long-term effectiveness studies are still needed [37].



Possible microbiome-targeted intervention to prevent skin aging

Figure 3: Possible microbiome-targeted intervention to prevent skin aging [41]


How to find out more about your gut health?


I work with the metagenomic shotgun/ whole genome sequencing to assess my patient's complete gut microbiome as well as its potential function. Metagenomics is considered the gold standard method to study the gut microbiota. [40]


This gut test detects bacteria, fungi, protists, and archaea amounting to over 28,000 species. Each person's microbiome contains over 200 species, all listed in the personalized report.


  • Includes identification of species that may confer pathogenic potential, such as Bacteroides fragilis and the fragilysin toxin;

  • It assesses all methane-producing organisms, including Methanobrevibacter smithii;

  • It assesses the genetic potential to form unique metabolites such as hexa-LPS, TMA, histamine, vitamin production, branched-chain amino acids, urease, GABA, hydrogen sulfide and many others

  • Many metabolites can be transported across the intestinal barrier and into the body's circulation.


Overview of results obtained from GI EffectsTM Comprehensive Stool profile

Figure 4: Overview of results obtained from GI EffectsTM Comprehensive Stool profile.



Gut 5R Framework


In my clinical practice, I employ the Gut "5R" framework, meticulously clinically designed, which aims at tackling an array of gastrointestinal ailments and imbalances within the gut microbiota. Utilizing a comprehensive assessment of the patient's gut microbiome composition and overall gut health, I employ this compounds reference table to discern the appropriate nutraceutical or herbal formulation tailored to address specific conditions.


Nonetheless, it is imperative to emphasize that dietary choices and lifestyle modifications constitute the fundamental pillars of this framework. While these compounds have undergone rigorous research and demonstrated efficacy, it is crucial to consider the individualized nature of each patient's circumstances, as numerous factors must be considered and factored into the treatment approach.


Gut 5R Framework


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